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Why Are Fermented Foods Good for Hypothyroidism?

Learn why fermented foods are not only good for the immune system but also for thyroid function.
Why Are Fermented Foods Good for Hypothyroidism?
Medically Reviewed by:
Medically Reviewed by:

A healthy gut is not only good for the immune system but also for thyroid function. In fact, Hashimoto's thyroiditis (an autoimmune attack of the thyroid gland) commonly occurs with Celiac disease and non-Celiac wheat sensitivity. 


A damaged gut barrier may cause increased intestinal permeability (commonly known as leaky gut), allowing antigens to pass through and trigger the immune system or cross-react with tissues outside the intestines.


Additionally, the health of your gut influences the availability of essential micronutrients for the thyroid gland. Iodine, iron, and copper are crucial for creating thyroid hormone, selenium and zinc help with thyroid hormone conversion, and vitamin D helps regulate the immune response. People with Hashimoto's thyroiditis are often deficient in these micronutrients, resulting in frustrating thyroid-related symptoms. 


Eating probiotics found in fermented foods supports digestion and shows positive effects on thyroid function. 


What are fermented foods?


Fermentation is an age-old technique still used today to preserve food. The fermentation process breaks down carbohydrates like starch and sugar using bacteria and yeast to make food come (literally) alive with good bacteria. 


Common fermented foods include: ‍

  • Kefir
  • Sauerkraut
  • Tempeh
  • Kombucha
  • Kimchi
  • Yogurt
  • Sourdough bread
  • Beer and wine


During the transformative fermentation process, the added bacteria prepare vitamins and minerals to be used by the body, remove some non-nutrients, and produce beneficial microbes. Research suggests that fermented foods offer a range of health benefits as a result. Benefits may include anti-oxidant, anti-microbial, anti-fungal, and anti-inflammatory effects. 


Healthy gut, healthy thyroid


Hypothyroidism, or an underactive thyroid, manifests in the body as decreased metabolic functions. Hypothyroidism affects virtually every system in your body, including your gastrointestinal tract (a.k.a, your gut).


Generally speaking, the thyroid is sensitive to changes in the gut microbiome. A well-balanced gut supports metabolic functions like digestion, nutrient absorption, detoxification, and vitamins' synthesis. Beneficial bacteria maintain your gut barrier integrity and help maintain an acidic environment to discourage pathogenic bacteria from moving in.


Often, people with Hashimoto's thyroiditis, an autoimmune thyroid condition, have an imbalanced gut microbiome—meaning that there are more bad bacteria than good bacteria in the gut's environment. There is evidence that the gut microbiome and thyroid autoimmunity influence one another, and an imbalance can lead to leaky gut.


Leaky gut means that your intestinal junctions' integrity is weak, allowing microorganisms to escape into your bloodstream. When this happens, your immune system attacks them, thinking they are foreign invaders. 


Fermentation produces beneficial microbes (a.k.a probiotics) that can introduce helpful bacteria to pathogenic bacteria's overgrowth. Rebalancing the bacteria in the gut through these fermented foods, probiotic supplements, or medication may help reduce intestinal permeability, which can help manage autoimmune conditions and improve overall health. 


Generally speaking, probiotics are helpful in the treatment and prevention of gastrointestinal issues.


Safety precautions and side effects


Fermented foods are considered safe for most people. However, studies show that some people may experience minor digestive symptoms like cramping, nausea, irregular stools, and gas. These side effects are only temporary due to the high probiotic content of fermented foods that cause colonic activity.


Look for fermented foods that are refrigerated, not room-temperature jars or cans. Refrigeration ensures that active cultures stay alive. 


Pay attention to nutrition labels to choose the healthiest option for you. Some pickled foods are mass-produced and treated with sodium, citric acid, or other chemicals that do not allow probiotics to develop appropriately. You want to see mention of live bacteria, fermented, or probiotics on the label, not high levels of sugar, salt, or fat. Only pure fermentation, without pasteurization (sterilization through heat), produces probiotic enzymes and all their benefits. 


You can also ferment foods at home. Be sure to keep correct temperatures, fermentation times, and sterile equipment to avoid spoiled, unsafe food.

How to ferment food at home


Fermenting at home is relatively cheap and easy. (Plus, you'll impress all your friends!) Lacto-fermentation is one of the most common fermentation processes. Lacto refers to the Lactobacillus bacteria, which transforms sugars into lactic acid during ferment.


Pick your produce

Organic produce is preferred because the good bacteria stay intact due to it not being sprayed with pesticides. Hearty vegetables like cabbage, carrots, cauliflower, or celery also better maintain their crunch after fermentation. 


Find a container

No need to get fancy. Any glass jars will do! Make sure to clean them thoroughly with soap and water and let them dry. You don't want any harmful bacteria hanging out in there. 


Decide to use salt or a fermentation starter

The method you choose may depend on personal taste or special dietary requirements. A fermentation starter is a microbiological culture that contains bacterial strains that perform fermentation. Find a friend who is willing to give you some of theirs, or buy a powdered starter online. If using salt, try Himilayan, kosher, pickling, or sea salt. Avoid iodized salt as it may inhibit the culturing process.


Mix and wait

Put your veggies, seasoning, and starter in your jars, and then cover with filtered water. Put your jars in a cool, dark place, and wait for one to two weeks until you see probiotic activity. Remember: bubbles are a sign of life! 


Move vegetables to cold storage

Once your veggies are fermented, move them into the fridge, where they will store for several months to enjoy! 


A note from Paloma Health

We recommend that you work with a thyroid nutritionist to develop a way of eating that works for you individually. Our registered dietitian nutritionists can help you identify dietary triggers and reverse nutritional deficiencies.



Join us in the Thyroid Care Club Facebook Group for more on this topic and many others regarding thyroid health and well-being.

Katie Wilkinson

Katie Wilkinson is the Head of Content and Community at Paloma Health. She is passionate about the intersection of healthcare and technology. Living with an autoimmune condition and having been let down by the traditional healthcare system, Katie has a personal and professional interest in improving patient access to better care.

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